官网

http://lindenb.github.io/jvarkit/Sam2Tsv.html

下载安装

$ git clone "https://github.com/lindenb/jvarkit.git"
$ cd jvarkit
$ ./gradlew sam2tsv

Example

$  java -jar dist/sam2tsv.jar -R src/test/resources/toy.fa src/test/resources/toy.bam