ghmm在 Linux 上安装
http://ghmm.sourceforge.net/documentation.html
http://www.ghmm.org
http://www.comp.leeds.ac.uk/roger/HiddenMarkovModels/html_dev/main.html
1）先安装pcre, libxml2
rhel6:
yum install pcre-devel
yum install libxml2
yum install libxml2-devel
ubuntu:
sudo apt-get install libpcre3 libpcre3-dev
你可能还需要安装
sudo apt-get install openssl libssl-dev
sudo apt-get install automake
sudo apt-get install libxml2-dev
sudo apt-get install pkg-config
2）再安装swig
ftp://pub:pub@pepstack.com/tarball/swig-3.0.10.tgz
./configure
make
sudo make install
3）安装ghmm
从下面的网址下载。原网站的代码里面含有很多错误。我都fix掉了。
ftp://pub:pub@pepstack.com/tarball/ghmm-0.9rc3-fix.tgz
cd ghmm sh autogen.sh vi ./configure 在15003行，修改： $RM "$cfgfile" 为：
$RM -f "$cfgfile"
./configure
make
sudo make install
或者：
cd ghmm
sh autogen.sh
./configure
make
sudo make install
cd ghmmwrapper
python2.7 setup.py build
sudo python2.7 setup.py install
如果是anaconda2环境，则：
/opt/anaconda2/bin/python setup.py build
sudo /opt/anaconda2/bin/python setup.py install
最后：
rhel6:
sudo ln -s /usr/local/lib/libghmm.so.1 /usr/lib64/libghmm.so.1
ubuntu:
sudo ln -s /usr/local/lib/libghmm.so.1 /usr/lib/libghmm.so.1
试试吧：
python2.7 -c "import ghmm"
如果是anaconda2:
/opt/anaconda2/bin/python -c "import ghmm"
可以用c或python玩hmm了！
