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1.文档编写目的
继之前的文章讲述如何在Redhat中配置R环境和如何在Redhat中安装R的包及搭建R的私有源后,那我们如何使用R连接CDH集群中的Hive和Impala进行数据分析呢?本文档主要讲述如何使用R连接Hive和Impala,并分别通过命令行和CDSW进行演示。
- 内容概述
1.驱动包准备
2.命令行测试
3.CDSW测试
4.常见问题
- 测试环境
1.CM和CDH版本5.11.2
2.采用sudo权限的ec2-user用户操作
3.R版本3.4.2
4.CDSW版本1.1.1
- 前置条件
1.R环境已配置
2.CDSW正常运行
3.集群未启用认证服务
2.驱动包准备
1.准备Hive的JDBC驱动和Impala的JDBC驱动
Hive下载地址:
[ec2-user@ip-172-31-21-45 hive-test]$ wget https://downloads.cloudera.com/connectors/hive_jdbc_2.5.19.1053.zip
Impala下载地址:
[ec2-user@ip-172-31-21-45 hive-test]$ wget https://downloads.cloudera.com/connectors/impala_jdbc_2.5.41.1061.zip
2.解压(以Hive JDBC为例)
[ec2-user@ip-172-31-21-45 hive-test]$ unzip hive_jdbc_2.5.19.1053.zip
[ec2-user@ip-172-31-21-45 2.5.19.1053 GA]$ cd 2.5.19.1053\ GA/[ec2-user@ip-172-31-21-45 2.5.19.1053 GA]$ lltotal 17112-rw-rw-r-- 1 ec2-user ec2-user 8414253 Jul 7 16:19 Cloudera_HiveJDBC41.zip-rw-rw-r-- 1 ec2-user ec2-user 8398497 Jul 7 16:20 Cloudera_HiveJDBC4.zip-r--r--r-- 1 ec2-user ec2-user 559084 Jul 4 11:30 Cloudera-JDBC-Driver-for-Apache-Hive-Install-Guide.pdf-r--r--r-- 1 ec2-user ec2-user 117144 Jul 4 11:30 Cloudera-JDBC-Driver-for-Apache-Hive-Release-Notes.pdf-rw-rw-r-- 1 ec2-user ec2-user 22065 Aug 10 06:26 Cloudera-JDBC-Driver-for-Apache-Hive-Release-Notes.txt[ec2-user@ip-172-31-21-45 2.5.19.1053 GA]$
文件说明:
Cloudera_HiveJDBC41.zip支持JDK7或更高版本
Cloudera_HiveJDBC4.zip支持JDK6或更高版本
Cloudera-JDBC-Driver-for-Apache-Hive-Install-Guide.pdf说明文档
[ec2-user@ip-172-31-21-45 2.5.19.1053 GA]$ unzip Cloudera_HiveJDBC41.zip … inflating: commons-codec-1.3.jar
inflating: commons-logging-1.1.1.jar
inflating: HiveJDBC41.jar
inflating: hive_metastore.jar
inflating: hive_service.jar
inflating: httpclient-4.1.3.jar
inflating: httpcore-4.1.3.jar
inflating: libfb303-0.9.0.jar
inflating: libthrift-0.9.0.jar
inflating: log4j-1.2.14.jar
inflating: ql.jar
inflating: slf4j-api-1.5.11.jar
inflating: slf4j-log4j12-1.5.11.jar
inflating: TCLIServiceClient.jar
inflating: zookeeper-3.4.6.jar [ec2-user@ip-172-31-21-45 2.5.19.1053 GA]$
将解压的所有jar包移动到/home/ec2-user/hive-test/hivedriver目录
[ec2-user@ip-172-31-21-45 2.5.19.1053 GA]$ mv *.jar /home/ec2-user/hivedriver
3.命令行测试
1.运行R控制台,安装依赖包
> install.packages("DBI")> install.packages("RJDBC")> install.packages("rJava")
2.编写R连接Hive测试代码
[ec2-user@ip-172-31-21-45 hive-test]$ vim TestHive.R library("DBI")library("rJava")library("RJDBC")hive.class.path = list.files(path=c("/opt/cloudera/parcels/CDH/lib/hive/lib"),pattern="jar", full.names=T);
cp = c(hive.class.path).jinit(classpath=cp,parameters="-Djavax.security.auth.useSubjectCredsOnly=false")
drv <- JDBC("org.apache.hive.jdbc.HiveDriver", "/home/ec2-user/hive-test/hivedriver/HiveJDBC41.jar",identifier.quote="`")
conn <- dbConnect(drv, "jdbc:hive2://ip-172-31-21-45.ap-southeast-1.compute.internal:10000")
show_databases <- dbGetQuery(conn, "show databases")
show_databases
tableCount <- dbGetQuery(conn, "select count(*) from tpcds_parquet.call_center")
tableCount
运行测试代码
[ec2-user@ip-172-31-21-45 hive-test]$ Rscript TestHive.RLoading required package: methods… database_name
1 default2 tpcds_parquet3 tpcds_text
_c0
1 24[ec2-user@ip-172-31-21-45 hive-test]$
3.编写R连接Impala测试代码
[ec2-user@ip-172-31-21-45 hive-test]$ vim TestImpala.R library("DBI")library("rJava")library("RJDBC")impala.class.path = list.files(path=c("/home/ec2-user/hive-test/impaladriver"),pattern="jar", full.names=T)cp = c(impala.class.path).jinit(classpath=cp,parameters="-Djavax.security.auth.useSubjectCredsOnly=false")drv <- JDBC("com.cloudera.impala.jdbc41.Driver", "/home/ec2-user/hive-test/impaladriver/ImpalaJDBC41.jar",identifier.quote="`")
conn <- dbConnect(drv, "jdbc:impala://ip-172-31-26-102.ap-southeast-1.compute.internal:21050")
show_databases <- dbGetQuery(conn, "show databases")
show_databases
tableCount <- dbGetQuery(conn, "select count(*) from tpcds_parquet.call_center")
tableCount
运行测试代码
[ec2-user@ip-172-31-21-45 hive-test]$ Rscript TestImpala.R Loading required package: methods
name comment1 _impala_builtins System database for Impala builtin functions2 default Default Hive database3 tpcds_parquet 4 tpcds_text
expr_0
1 24[ec2-user@ip-172-31-21-45 hive-test]$
4.CDSW测试
1.登录CDSW,挂载主机的目录到CDSW会话Session中
CDSW服务所在服务器的目录
进入Admin->Engines,将driver目录挂载到CDSW上
2.登录CDSW创建一个R的工程
3.创建TestHive.r和TestImpala.r
4.启动会话
这个时候我们通过终端就能看到我们挂载的driver目录
5.在CDSW中安装依赖包
install.packages("DBI")install.packages("RJDBC")install.packages("rJava")
6.将命令行的测试代码复制到CDSW中的TestHive.r文件中,做相应修改
library("DBI")library("rJava")library("RJDBC")hive.class.path = list.files(path=c("/opt/cloudera/parcels/CDH/lib/hive/lib"),pattern="jar", full.names=T)cp = c(hive.class.path).jinit(classpath=cp,parameters="-Djavax.security.auth.useSubjectCredsOnly=false")drv <- JDBC("org.apache.hive.jdbc.HiveDriver", "/driver/hivedriver/HiveJDBC41.jar",identifier.quote="`")
conn <- dbConnect(drv, "jdbc:hive2://ip-172-31-21-45.ap-southeast-1.compute.internal:10000")
show_databases <- dbGetQuery(conn, "show databases")
show_databases
tableCount <- dbGetQuery(conn, "select count(*) from tpcds_parquet.call_center")
tableCount
7.运行TestHive.r
8.创建TestImpala.r,将命令行代码拷贝至CDSW中,并做相应修改
library("DBI")library("rJava")library("RJDBC")impala.class.path = list.files(path=c("/home/ec2-user/hive-test/impaladriver"),pattern="jar", full.names=T)cp = c(impala.class.path).jinit(classpath=cp,parameters="-Djavax.security.auth.useSubjectCredsOnly=false")drv <- JDBC("com.cloudera.impala.jdbc41.Driver", "/driver/impaladriver/ImpalaJDBC41.jar",identifier.quote="`")
conn <- dbConnect(drv, "jdbc:impala://ip-172-31-26-102.ap-southeast-1.compute.internal:21050")
show_databases <- dbGetQuery(conn, "show databases")
show_databases
tableCount <- dbGetQuery(conn, "select count(*) from tpcds_parquet.call_center")
tableCount
9.运行TestImpala.r
5.常见问题
1.安装rJava包的时候报错
cpp flags : '-I/usr/java/jdk1.6.0_31/jre/../include -I/usr/java/jdk1.6.0_31/jre/../include/linux'java libs : '-L/usr/java/jdk1.6.0_31/jre/lib/amd64/server -ljvm'configure: error: One or more Java configuration variables are not set.Make sure R is configured with full Java support (including JDK). Run
R CMD javareconfas root to add Java support to R.
If you don't have root privileges, runR CMD javareconf -eto set all Java-related variables and then install rJava.
ERROR: configuration failed for package ‘rJava’* removing ‘/usr/local/R-3.4.2/lib64/R/library/rJava’
解决方法:
使用root用户执行命令
[root@ip-172-31-21-45 ec2-user]# source /etc/profile[root@ip-172-31-21-45 ec2-user]# R CMD javareconf …
JAVA_HOME : /usr/java/jdk1.7.0_67-cloudera/jreJava library path: $(JAVA_HOME)/lib/amd64/serverJNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linuxJNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvmUpdating Java configuration in /usr/local/R-3.4.2/lib64/RDone.
[root@ip-172-31-21-45 ec2-user]#
醉酒鞭名马,少年多浮夸! 岭南浣溪沙,呕吐酒肆下!挚友不肯放,数据玩的花!
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